PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.006G125800.1

Common Name

POPTR_0006s12770g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 199aa MW: 21323.8 Da PI: 7.0328

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G125800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.4	2.6e-34	52	119	6	73
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++++++hTkv+gR+RRvR++a++aar+F+L++eLG+ +d++tieWLl++a+++i+++tgt+++++ Potri.006G125800.1 52 SQSKDRHTKVNGRGRRVRMPALTAARVFQLTRELGHRSDGETIEWLLRNAEASIIAATGTGTIPSIPI 119 678*********************************************************99998443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.6E-29	53	127	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.994	54	108	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MVLYNLSSTS NNHHHQQNSN LNNNNHVVPT TIPAASSGSD SKLAHPRKST ASQSKDRHTK 60 VNGRGRRVRM PALTAARVFQ LTRELGHRSD GETIEWLLRN AEASIIAATG TGTIPSIPIS 120 TTVGSAPTSA SPLSVSGEVH PAIDAGPDGF SLTEASCRLD LDYRHMPFTA LLLKPLSENV 180 DLEAEEGRQE EVIGEQKM*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.3781	0.0	bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G125800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006381427.2	1e-145	transcription factor TCP11
TrEMBL	A0A2K2A187	1e-143	A0A2K2A187_POPTR; Uncharacterized protein
STRING	POPTR_0006s12770.1	1e-143	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	2e-31	TCP family protein

Link Out ? help Back to Top
Phytozome	Potri.006G125800.1
Entrez Gene	18100170