PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G126300.7
Common NamePOPTR_0006s12820g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 107aa    MW: 12466.6 Da    PI: 11.6296
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G126300.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41.1e-10249448
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                        WTt E  +l+d+++q+G+g+W+ I + m      Rt+ +++++w+++l
  Potri.006G126300.7  2 WTTPEVMKLIDGIAQYGTGRWTDIKKLMFsstAYRTPIDLRDKWRNLL 49
                        ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd116601.21E-15150No hitNo description
PROSITE profilePS5129414.811153IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-12252IPR009057Homeodomain-like
SuperFamilySSF466891.72E-17275IPR009057Homeodomain-like
PfamPF002492.3E-8249IPR001005SANT/Myb domain
SMARTSM007172.2E-6251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MWTTPEVMKL IDGIAQYGTG RWTDIKKLMF SSTAYRTPID LRDKWRNLLR ASGAQKRKSN  60
KKEVKEKLKD VVRSLPSSVF RRVRELASLH PYPRFSPGGR YIRRKN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.13360.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G126300.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2312206e-85CU231220.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381433.12e-69uncharacterized protein LOC18100175
RefseqXP_006381434.12e-69uncharacterized protein LOC18100175
RefseqXP_006381436.22e-69uncharacterized protein LOC18100175
RefseqXP_011018717.12e-69PREDICTED: uncharacterized protein LOC105121688
RefseqXP_011018718.12e-69PREDICTED: uncharacterized protein LOC105121688
RefseqXP_024459622.12e-69uncharacterized protein LOC18100175
TrEMBLU5GCT15e-68U5GCT1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12820.29e-69(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-21TRF-like 6