PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G129400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 338aa    MW: 38507.4 Da    PI: 8.2626
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G129400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.68.7e-52111381128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhP+deel+v+yLk++v++++l++ ++i+e+d+yk++Pw+Lpkk+  + +ewyfF++rd+ky++g r+nra++sgyWkatg+dk+
  Potri.006G129400.1  11 LPPGFRFHPSDEELIVHYLKNRVSSSPLPA-SIIAEIDLYKYNPWELPKKALFGVDEWYFFTPRDRKYPNGARPNRAAASGYWKATGTDKS 100
                         79****************************.89***************88888999*********************************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++ +++++g+kktLvfy+gr pkg ktdW mheyrl
  Potri.006G129400.1 101 IFNSfGTAKIGVKKTLVFYEGRPPKGLKTDWNMHEYRL 138
                         ***989999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-618166IPR003441NAC domain
PROSITE profilePS5100559.24311166IPR003441NAC domain
PfamPF023656.9E-2712138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEAKASSGIQ LPPGFRFHPS DEELIVHYLK NRVSSSPLPA SIIAEIDLYK YNPWELPKKA  60
LFGVDEWYFF TPRDRKYPNG ARPNRAAASG YWKATGTDKS IFNSFGTAKI GVKKTLVFYE  120
GRPPKGLKTD WNMHEYRLLD AMIWNNSKRK GSMRLDDWVL CRVRQKNSIP RNTWQDQNIP  180
SCASAPTGLF PKVNELQQMN INPNTEMVTN YFYDDCPMLP CIFSPQNFPS TERASSINFL  240
SSDKSCTSFH NLLNLLKRKP AETNQQRGNC FPPGKMLRTK ADIEEDVVSI RNDGTDENFS  300
GTDQSESGNF STEQWNSPMQ YQECNHLTFT GNHLTLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-6721756173Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G129400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048576.10.0PREDICTED: putative NAC domain-containing protein 94
TrEMBLA0A2K2A1F30.0A0A2K2A1F3_POPTR; Uncharacterized protein
STRINGPOPTR_0016s08970.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-81NAC domain containing protein 25