PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.006G130200.1

Common Name

POPTR_0006s13230g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

S1Fa-like

Protein Properties

Length: 89aa MW: 9778.54 Da PI: 10.1892

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G130200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	138.2	1.8e-43	23	88	5	70
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +e kGlnPGlivllv+gglll+fl+gny+ly yaqk+lPPrkkkP+skkk+k+e+lkqGv++PGe Potri.006G130200.1 23 DAEPKGLNPGLIVLLVIGGLLLTFLIGNYVLYSYAQKTLPPRKKKPISKKKMKKERLKQGVSAPGE 88 5799*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.6E-40	24	88	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MEDDFEFSNS PPSFQNMGDL IKDAEPKGLN PGLIVLLVIG GLLLTFLIGN YVLYSYAQKT 60 LPPRKKKPIS KKKMKKERLK QGVSAPGE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.2872	1e-138	bud\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G130200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144560	1e-147	EF144560.1 Populus trichocarpa clone WS01110_K04 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006381480.1	5e-57	DNA-binding protein S1FA
Swissprot	Q42337	3e-16	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	A9P8U4	1e-55	A9P8U4_POPTR; S1Fa-like family protein
STRING	POPTR_0006s13230.1	2e-56	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55
Representative plant	OGRP5095	13	22

Link Out ? help Back to Top
Phytozome	Potri.006G130200.1
Entrez Gene	18100218

Publications ? help Back to Top
Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180]