PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G135600.1
Common NamePOPTR_0006s13790g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 512aa    MW: 54773.5 Da    PI: 4.5978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G135600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.6e-12306351555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR++i +++ +L+el+P++      K++Ka++L + +eY+k Lq
  Potri.006G135600.1 306 HSIAERLRREKIAERMKNLQELVPNS-----NKVDKASMLDEIIEYVKFLQ 351
                         99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16299361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.11E-12299355No hitNo description
PROSITE profilePS5088816.755301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16304360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-9306351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-13307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MMDEYLNHLI SSSSLVDGDV KESSSWVCSE PNQPNAFLPT SLELYQDDKK NSPVSMISSN  60
QSVESLATQD TSSVVLGSES DYAVDKVLIS EQARLQNDCQ NCNGNPSPDG MARGNLKFGN  120
TGLQCNGILP TLSSLNYPNQ LPIVGDLTSY LSFSEASNAG CNGREQSEYL RSLKNLQNLS  180
SIPQLWPSQS YEGVSSLPPL MGQDRIEGSG LRGGNLDDDM HIMGKGYMGM DEILRLDKLS  240
ASPTTEGKED LQSCPFSSGI AEPNVNMSMN QLSSMPQTTS AAPVEGCNGT GKTRVRARRG  300
HATDPHSIAE RLRREKIAER MKNLQELVPN SNKVDKASML DEIIEYVKFL QLQVKVLSMS  360
RLGAAGAVIP LLTDGQPEGH NSLSLSPSAG LGIDISPSAD QIAFEQEVLK LLESDVTMAM  420
QYLQSKGLCL MPIALAAAIS SVKASLSGTT SEERKNNGYT SGLVSSSSSI TGIDTHPMSN  480
DNNIATGTLS SKGMIVNGCN EVVKQEVLKN T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.15070.0bud| catkin
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G135600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4717977e-36AM471797.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X221977.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381552.10.0uncharacterized protein LOC18100273
TrEMBLU5GAR60.0U5GAR6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150611314
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-57LJRHL1-like 3