PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G145100.5
Common NamePOPTR_0006s14740g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 248aa    MW: 26988.2 Da    PI: 10.2124
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G145100.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.61.8e-3289145158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  Potri.006G145100.5  89 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-VKNRKPYLHESRHIHALNRVRGSGGRF 145
                         57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-3687148IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.8988148IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.8E-2891145IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.8E-2491113IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686093113IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.8E-24122145IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSQDESCGKG VEGKMRPVLL LSTPDGVSNH SQADCSYSMV RTPYPCADPY FGGLFNPYGP  60
HAFIQPQMGS HMVGMTAGRV PLPLDLADDG PIYVNAKQYH GILRRRQSRA KLEAQNKLVK  120
NRKPYLHESR HIHALNRVRG SGGRFLSTKK LQRSDPTSSH GQCNVLDTIH LHPKNNASEL  180
ESFQSRTGQS SASNTTRSDT TSVSNSDVNF RQPDRGFSGI AAHLVGGRQI NGGLMSSGNQ  240
HHASVVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-2289150263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G145100.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459829.10.0nuclear transcription factor Y subunit A-4 isoform X2
RefseqXP_024459831.10.0nuclear transcription factor Y subunit A-7 isoform X4
RefseqXP_024459832.10.0nuclear transcription factor Y subunit A-7 isoform X4
SwissprotQ93ZH22e-46NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A2K2A2G20.0A0A2K2A2G2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s14740.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.17e-49nuclear factor Y, subunit A3