PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G145100.6
Common NamePOPTR_0006s14740g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 181aa    MW: 19725.1 Da    PI: 11.4837
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G145100.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.49.9e-332278158
           CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                        d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  Potri.006G145100.6 22 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-VKNRKPYLHESRHIHALNRVRGSGGRF 78
                        57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-362081IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.892181IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-242446IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.9E-282478IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068602646IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-245578IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGSHMVGMTA GRVPLPLDLA DDGPIYVNAK QYHGILRRRQ SRAKLEAQNK LVKNRKPYLH  60
ESRHIHALNR VRGSGGRFLS TKKLQRSDPT SSHGQCNVLD TIHLHPKNNA SELESFQSRT  120
GQSSASNTTR SDTTSVSNSD VNFRQPDRGF SGIAAHLVGG RQINGGLMSS GNQHHASVVR  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-232283263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G145100.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459831.11e-129nuclear transcription factor Y subunit A-7 isoform X4
RefseqXP_024459832.11e-129nuclear transcription factor Y subunit A-7 isoform X4
SwissprotQ93ZH22e-43NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A2K2A2G21e-128A0A2K2A2G2_POPTR; Uncharacterized protein
TrEMBLA0A3N7FZ011e-128A0A3N7FZ01_POPTR; Uncharacterized protein
TrEMBLB9HDV61e-127B9HDV6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s14740.11e-128(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.19e-46nuclear factor Y, subunit A3