PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G150000.1
Common NamePOPTR_0006s15450g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HRT-like
Protein Properties Length: 690aa    MW: 76502.5 Da    PI: 9.4351
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G150000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like54.52e-17264294131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iCG+i+ dG++C+r+Pv+g+KRCeeHKG+R+
  Potri.006G150000.1 264 ICGFIMVDGIPCRRPPVPGGKRCEEHKGRRV 294
                         8*****************************7 PP
2HRT-like61.11.7e-19328358131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l+dG++C++q+v gRKRCeeHKGmR+
  Potri.006G150000.1 328 TCGVNLGDGTFCRKQAVAGRKRCEEHKGMRV 358
                         7*****************************7 PP
3HRT-like57.71.9e-18417447131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l++Gs+C+rqP+ g+KRC++HKG+R+
  Potri.006G150000.1 417 TCGVMLGNGSFCRRQPILGNKRCWQHKGQRV 447
                         7*****************************7 PP
4HRT-like57.71.9e-18511541131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l++Gs+C+rqP+ g+KRC++HKG+R+
  Potri.006G150000.1 511 TCGVMLGNGSFCRRQPILGNKRCWQHKGQRV 541
                         7*****************************7 PP
5HRT-like58.41.2e-18605635131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l++Gs+C+rqP++g+KRC++HKG+R+
  Potri.006G150000.1 605 TCGVMLGNGSFCRRQPIQGNKRCWQHKGKRV 635
                         7*****************************7 PP
6HRT-like57.71.9e-18653683131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iC v+l+dGsvC r Pv+gRKRC +HKGmR+
  Potri.006G150000.1 653 ICEVTLRDGSVCLRAPVQGRKRCDQHKGMRV 683
                         8*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MDVGARLKRE DYKRTKHDSS FSKWQLLIGP SDWQDYFLGK EGASRYRIHN LPTTSGPGLY  60
ELGIAVPRSG LSRRDGGKLV RDDIVVVYLG QADNVRTRLQ QYGRSGAHLG NTYSTGHVND  120
SKDDSLQKGL GLFEEIFSRG QSIVYRWAPM KDKRDAEETE GKLLGTFDYA WNKGSNGTRR  180
PSDVLQNLNS RTTRPPDIFQ WLPFSSHKLG GIKIKASKPL SPEKHAGFGD EDSKKLFFGI  240
FKLSRSQPRL VTDKYGINED SDCICGFIMV DGIPCRRPPV PGGKRCEEHK GRRVYGSSYK  300
SIAQRNLHYP HGANLDSTTH NDREHETTCG VNLGDGTFCR KQAVAGRKRC EEHKGMRVNT  360
SVLEPAAEDK IRMSAPSSVF NSFADGVNNN ASSKHNADST WQCGSSNNPV KEHFPNTCGV  420
MLGNGSFCRR QPILGNKRCW QHKGQRVECN LSGVDSSEPA AEEKIRMSAP SSVFNSFADS  480
VNNNASSKHN ADSTWQCGSS NNPVKEHFPN TCGVMLGNGS FCRRQPILGN KRCWQHKGQR  540
VECNLSGVDS SEPAAEEKIR MSAPSSVFNS FADSVNNNAS SKHNAYSTWQ CGSSNNPVKE  600
LFPNTCGVML GNGSFCRRQP IQGNKRCWQH KGKRVECNFS GVDSSSLRFD APICEVTLRD  660
GSVCLRAPVQ GRKRCDQHKG MRVSTSYHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G150000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460011.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A2K2A2P60.0A0A2K2A2P6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Representative plantOGRP52481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-106effector of transcription2