PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G150000.2
Common NamePOPTR_0006s15450g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HRT-like
Protein Properties Length: 664aa    MW: 73832.7 Da    PI: 9.4379
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G150000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like54.51.9e-17264294131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iCG+i+ dG++C+r+Pv+g+KRCeeHKG+R+
  Potri.006G150000.2 264 ICGFIMVDGIPCRRPPVPGGKRCEEHKGRRV 294
                         8*****************************7 PP
2HRT-like61.11.7e-19328358131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l+dG++C++q+v gRKRCeeHKGmR+
  Potri.006G150000.2 328 TCGVNLGDGTFCRKQAVAGRKRCEEHKGMRV 358
                         7*****************************7 PP
3HRT-like57.81.8e-18391421131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l++Gs+C+rqP+ g+KRC++HKG+R+
  Potri.006G150000.2 391 TCGVMLGNGSFCRRQPILGNKRCWQHKGQRV 421
                         7*****************************7 PP
4HRT-like57.81.8e-18485515131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l++Gs+C+rqP+ g+KRC++HKG+R+
  Potri.006G150000.2 485 TCGVMLGNGSFCRRQPILGNKRCWQHKGQRV 515
                         7*****************************7 PP
5HRT-like58.41.1e-18579609131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l++Gs+C+rqP++g+KRC++HKG+R+
  Potri.006G150000.2 579 TCGVMLGNGSFCRRQPIQGNKRCWQHKGKRV 609
                         7*****************************7 PP
6HRT-like57.81.8e-18627657131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iC v+l+dGsvC r Pv+gRKRC +HKGmR+
  Potri.006G150000.2 627 ICEVTLRDGSVCLRAPVQGRKRCDQHKGMRV 657
                         8*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MDVGARLKRE DYKRTKHDSS FSKWQLLIGP SDWQDYFLGK EGASRYRIHN LPTTSGPGLY  60
ELGIAVPRSG LSRRDGGKLV RDDIVVVYLG QADNVRTRLQ QYGRSGAHLG NTYSTGHVND  120
SKDDSLQKGL GLFEEIFSRG QSIVYRWAPM KDKRDAEETE GKLLGTFDYA WNKGSNGTRR  180
PSDVLQNLNS RTTRPPDIFQ WLPFSSHKLG GIKIKASKPL SPEKHAGFGD EDSKKLFFGI  240
FKLSRSQPRL VTDKYGINED SDCICGFIMV DGIPCRRPPV PGGKRCEEHK GRRVYGSSYK  300
SIAQRNLHYP HGANLDSTTH NDREHETTCG VNLGDGTFCR KQAVAGRKRC EEHKGMRVNT  360
SVLEPAAEDK IHSTWQCGSS NNPVKEHFPN TCGVMLGNGS FCRRQPILGN KRCWQHKGQR  420
VECNLSGVDS SEPAAEEKIR MSAPSSVFNS FADSVNNNAS SKHNADSTWQ CGSSNNPVKE  480
HFPNTCGVML GNGSFCRRQP ILGNKRCWQH KGQRVECNLS GVDSSEPAAE EKIRMSAPSS  540
VFNSFADSVN NNASSKHNAY STWQCGSSNN PVKELFPNTC GVMLGNGSFC RRQPIQGNKR  600
CWQHKGKRVE CNFSGVDSSS LRFDAPICEV TLRDGSVCLR APVQGRKRCD QHKGMRVSTS  660
YHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G150000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460011.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A2K2A2P60.0A0A2K2A2P6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15450.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-102effector of transcription2