PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G150000.3
Common NamePOPTR_0006s15450g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HRT-like
Protein Properties Length: 668aa    MW: 73823.6 Da    PI: 9.249
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G150000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like54.51.9e-17242272131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iCG+i+ dG++C+r+Pv+g+KRCeeHKG+R+
  Potri.006G150000.3 242 ICGFIMVDGIPCRRPPVPGGKRCEEHKGRRV 272
                         8*****************************7 PP
2HRT-like61.11.7e-19306336131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l+dG++C++q+v gRKRCeeHKGmR+
  Potri.006G150000.3 306 TCGVNLGDGTFCRKQAVAGRKRCEEHKGMRV 336
                         7*****************************7 PP
3HRT-like57.81.8e-18395425131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l++Gs+C+rqP+ g+KRC++HKG+R+
  Potri.006G150000.3 395 TCGVMLGNGSFCRRQPILGNKRCWQHKGQRV 425
                         7*****************************7 PP
4HRT-like57.81.8e-18489519131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l++Gs+C+rqP+ g+KRC++HKG+R+
  Potri.006G150000.3 489 TCGVMLGNGSFCRRQPILGNKRCWQHKGQRV 519
                         7*****************************7 PP
5HRT-like58.41.1e-18583613131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l++Gs+C+rqP++g+KRC++HKG+R+
  Potri.006G150000.3 583 TCGVMLGNGSFCRRQPIQGNKRCWQHKGKRV 613
                         7*****************************7 PP
6HRT-like57.81.8e-18631661131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iC v+l+dGsvC r Pv+gRKRC +HKGmR+
  Potri.006G150000.3 631 ICEVTLRDGSVCLRAPVQGRKRCDQHKGMRV 661
                         8*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MIQLLIGPSD WQDYFLGKEG ASRYRIHNLP TTSGPGLYEL GIAVPRSGLS RRDGGKLVRD  60
DIVVVYLGQA DNVRTRLQQY GRSGAHLGNT YSTGHVNDSK DDSLQKGLGL FEEIFSRGQS  120
IVYRWAPMKD KRDAEETEGK LLGTFDYAWN KGSNGTRRPS DVLQNLNSRT TRPPDIFQWL  180
PFSSHKLGGI KIKASKPLSP EKHAGFGDED SKKLFFGIFK LSRSQPRLVT DKYGINEDSD  240
CICGFIMVDG IPCRRPPVPG GKRCEEHKGR RVYGSSYKSI AQRNLHYPHG ANLDSTTHND  300
REHETTCGVN LGDGTFCRKQ AVAGRKRCEE HKGMRVNTSV LEPAAEDKIR MSAPSSVFNS  360
FADGVNNNAS SKHNADSTWQ CGSSNNPVKE HFPNTCGVML GNGSFCRRQP ILGNKRCWQH  420
KGQRVECNLS GVDSSEPAAE EKIRMSAPSS VFNSFADSVN NNASSKHNAD STWQCGSSNN  480
PVKEHFPNTC GVMLGNGSFC RRQPILGNKR CWQHKGQRVE CNLSGVDSSE PAAEEKIRMS  540
APSSVFNSFA DSVNNNASSK HNAYSTWQCG SSNNPVKELF PNTCGVMLGN GSFCRRQPIQ  600
GNKRCWQHKG KRVECNFSGV DSSSLRFDAP ICEVTLRDGS VCLRAPVQGR KRCDQHKGMR  660
VSTSYHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G150000.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460011.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A2K2A2P60.0A0A2K2A2P6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15450.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.18e-94effector of transcription2