PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G150000.5
Common NamePOPTR_0006s15450g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HRT-like
Protein Properties Length: 502aa    MW: 56029.9 Da    PI: 9.7693
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G150000.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like551.3e-17264294131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iCG+i+ dG++C+r+Pv+g+KRCeeHKG+R+
  Potri.006G150000.5 264 ICGFIMVDGIPCRRPPVPGGKRCEEHKGRRV 294
                         8*****************************7 PP
2HRT-like61.61.2e-19328358131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l+dG++C++q+v gRKRCeeHKGmR+
  Potri.006G150000.5 328 TCGVNLGDGTFCRKQAVAGRKRCEEHKGMRV 358
                         7*****************************7 PP
3HRT-like58.98.1e-19417447131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l++Gs+C+rqP++g+KRC++HKG+R+
  Potri.006G150000.5 417 TCGVMLGNGSFCRRQPIQGNKRCWQHKGKRV 447
                         7*****************************7 PP
4HRT-like58.31.3e-18465495131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iC v+l+dGsvC r Pv+gRKRC +HKGmR+
  Potri.006G150000.5 465 ICEVTLRDGSVCLRAPVQGRKRCDQHKGMRV 495
                         8*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MDVGARLKRE DYKRTKHDSS FSKWQLLIGP SDWQDYFLGK EGASRYRIHN LPTTSGPGLY  60
ELGIAVPRSG LSRRDGGKLV RDDIVVVYLG QADNVRTRLQ QYGRSGAHLG NTYSTGHVND  120
SKDDSLQKGL GLFEEIFSRG QSIVYRWAPM KDKRDAEETE GKLLGTFDYA WNKGSNGTRR  180
PSDVLQNLNS RTTRPPDIFQ WLPFSSHKLG GIKIKASKPL SPEKHAGFGD EDSKKLFFGI  240
FKLSRSQPRL VTDKYGINED SDCICGFIMV DGIPCRRPPV PGGKRCEEHK GRRVYGSSYK  300
SIAQRNLHYP HGANLDSTTH NDREHETTCG VNLGDGTFCR KQAVAGRKRC EEHKGMRVNT  360
SVLEPAAEDK IRMSAPSSVF NSFADGVNNN ASSKHNADST WQCGSSNNPV KEHFPNTCGV  420
MLGNGSFCRR QPIQGNKRCW QHKGKRVECN FSGVDSSSLR FDAPICEVTL RDGSVCLRAP  480
VQGRKRCDQH KGMRVSTSYH Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G150000.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460011.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A2K2A2P60.0A0A2K2A2P6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15450.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-116effector of transcription2