PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G160400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 590aa    MW: 63827 Da    PI: 8.2067
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G160400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.23.9e-14111150242
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C N+ e+
  Potri.006G160400.1 111 KQKQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCYNNVEN 150
                         89**************************.********9875 PP
2TCR50.93.1e-16195234140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Potri.006G160400.1 195 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 234
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-15110150IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.655111235IPR005172CRC domain
PfamPF036388.4E-11112147IPR005172CRC domain
SMARTSM011148.4E-20195236IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12198233IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MGESEGSEFP PKKLQQSETA DFPAKKLARQ LDFTQGVLPE LQPSPVVVTP ASAQCQPQPQ  60
PHPQPQPQVV SIPVAPQQQT QQQPAARAVK PESPKSRPRL NAELKDGTPK KQKQCNCKHS  120
RCLKLYCECF ASGTYCDGCN CVNCYNNVEN EAARREAVEA TLERNPNAFR PKIASSPHGT  180
RDSREETGEG LVFVKHNKGC HCKKSGCLKK YCECFQANIL CSENCKCMDC KNFEGSEERQ  240
ALFHGDHGNN MAYIQQAANA AITGAIGSSG YASLPVSRKR KGQELFFGQT VKDPSFHRLG  300
HFQQASHIRP AAPSSPLPSN PVARAGNTTT LGSSKITYRS LLADIIQSQD LKELCSVLVV  360
LSGEAAKTLS DQRNSMKKRV EDQRDTFLAS STQERLQSQK EIDADKIVSN DCSSANHEGG  420
LDDSSLDGVD MPKGRPMSPG TMALMCDEQD TIFMAAASPN GLMGHGCDSS SQLPCGQGMT  480
EAHAEQERIV LMKFRDCLNR LITFGEIKET KCSSLARTEL GNEKGPPSTG LANTRTRTGS  540
QQGPFSNGVV KVPATAKPPQ MVTSIVATSS SDLKKIPSLP QNGDNKLKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-321022441132Protein lin-54 homolog
5fd3_B2e-321022441132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G160400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142820.0AC214282.1 Populus trichocarpa clone POP018-K04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458532.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2K2A3580.0A0A2K2A358_POPTR; Uncharacterized protein
STRINGPOPTR_0006s16340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-180Tesmin/TSO1-like CXC domain-containing protein