PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G186300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 227aa    MW: 25317.6 Da    PI: 6.9257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G186300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.25.5e-104592154
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                        s++kGV   + +g W ++I+       + +r++lg+f ++ eAa a++ a+ kl+
  Potri.006G186300.1 45 SRFKGVVPQP-NGHWGCQIYA------NhQRIWLGTFKSEREAAMAYDSAAIKLR 92
                        6899**8777.8******999......44**********99************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-1545102IPR016177DNA-binding domain
CDDcd000181.10E-2245103No hitNo description
PfamPF008474.1E-64592IPR001471AP2/ERF domain
SMARTSM003802.6E-1946107IPR001471AP2/ERF domain
PROSITE profilePS5103217.01646101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1746101IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-6163199IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEEETVSLIL NAETSVIEEL SDSNSSTHPF PPNKRARSGR NVSASRFKGV VPQPNGHWGC  60
QIYANHQRIW LGTFKSEREA AMAYDSAAIK LRSGDSRRNF PPTDITVQEP KFQSYYSIEV  120
VLAMIKDGTY QSKFADFIRT CSQSVETALS LKLMMPQSSE GLTCKQLFRK ELTPSDVGLV  180
IPKKYAIKYF PNISESAEED EAADKSELCL HQGLESIREG KKIEGK*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G186300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2158400.0AC215840.1 Populus trichocarpa clone POP043-C12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458800.11e-151AP2/ERF and B3 domain-containing transcription factor At1g51120
RefseqXP_024458801.11e-151AP2/ERF and B3 domain-containing transcription factor At1g51120
RefseqXP_024458802.11e-151AP2/ERF and B3 domain-containing transcription factor At1g51120
RefseqXP_024458803.11e-151AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6883e-58RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A3N7F9G41e-150A0A3N7F9G4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s11780.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Representative plantOGRP10227710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.15e-58RAV family protein