PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G190000.4
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 167aa    MW: 19003.4 Da    PI: 9.4182
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G190000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.44.9e-081171492254
                         SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +yp++e++++L +++gL+ +q+ +WF N+R +
  Potri.006G190000.4 117 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 149
                         69*****************************87 PP
2ELK23.61.2e-087091122
                 ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                        ELKh+L++ Y+++++++++E++
  Potri.006G190000.4 70 ELKHELKQDYKEKIVDIREEIL 91
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.8657090IPR005539ELK domain
SMARTSM011880.00497091IPR005539ELK domain
PfamPF037895.9E-57091IPR005539ELK domain
PROSITE profilePS5007111.67790153IPR001356Homeobox domain
SMARTSM003896.0E-1192157IPR001356Homeobox domain
SuperFamilySSF466891.41E-1692155IPR009057Homeodomain-like
CDDcd000862.61E-1093152No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2597153IPR009057Homeodomain-like
PfamPF059204.7E-18110149IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSKLKTKLLC LTGVSPGEGT GATMSDDDDD QADSDANLYD GNLDGLDTMG FGPLVPTETE  60
RSLMERVRQE LKHELKQDYK EKIVDIREEI LRKRRAGKLP GDTTSLLKAW WQTHSKWPYP  120
TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSSPSGSTS KSKRKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A4e-1393156871Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146165RKRNWHSSPSGSTSKSKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.183291e-165leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G190000.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7699990.0KP769999.1 Populus tomentosa Homeobox protein knotted-1-like 3 (Potri.006G190000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845383.11e-100PREDICTED: homeobox protein knotted-1-like LET12, partial
RefseqXP_012845575.11e-100PREDICTED: homeobox protein knotted-1-like LET12
RefseqXP_024459660.18e-99homeobox protein knotted-1-like 3 isoform X1
RefseqXP_024459662.15e-99homeobox protein knotted-1-like 3 isoform X3
RefseqXP_027329906.12e-99homeobox protein knotted-1-like 4 isoform X1
RefseqXP_027329907.12e-99homeobox protein knotted-1-like 4 isoform X2
SwissprotP480003e-94KNAT3_ARATH; Homeobox protein knotted-1-like 3
SwissprotP480013e-94KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A022QSN18e-99A0A022QSN1_ERYGU; Uncharacterized protein (Fragment)
STRINGPOPTR_0006s27560.11e-101(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.12e-83KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]