PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.006G201900.3

Common Name

POPTR_0006s21640g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YA

Protein Properties

Length: 260aa MW: 28133 Da PI: 9.8346

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G201900.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	96.9	2.3e-30	93	148	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RR++Rak++ e+kl ++rkpy+h SRh hA+rRpRg+gGrF Potri.006G201900.3 93 VPIYVNAKQYHGIIRRRKSRAKAALENKL-PRNRKPYMHRSRHLHAMRRPRGCGGRF 148 59*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.2E-34	90	151	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.783	91	151	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.7E-27	94	148	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-22	94	116	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-22	125	148	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MKCSTGLTCL HLSWPKRPGD CKPSGGGQKS VQGAISLQTA LPEYYAHFDL GFGQPVICAK 60 YPVVDQCYGL FSTFGPQISG RIMLPMSTTT DDVPIYVNAK QYHGIIRRRK SRAKAALENK 120 LPRNRKPYMH RSRHLHAMRR PRGCGGRFLN TKELNDGKGI TEAKKAGDFQ LSQPTGSQSS 180 EVLESGGATL NSMEANCGGS NLSGSEVTSL YNRVDFDRFP FNHHGPTVHG FSGMDGGHGI 240 GIGMPSKWIA AADNCSNLK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	9e-19	94	153	4	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G201900.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210132	0.0	AC210132.1 Populus trichocarpa clone POP011-D09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006381939.1	0.0	nuclear transcription factor Y subunit A-2 isoform X3
Swissprot	Q9M9X4	7e-49	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	U5GBP6	0.0	U5GBP6_POPTR; Uncharacterized protein
STRING	POPTR_0006s21640.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	3e-44	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Potri.006G201900.3
Entrez Gene	7479478

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]