PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G201900.4
Common NamePOPTR_0006s21640g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 270aa    MW: 29305.3 Da    PI: 10.2351
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G201900.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.82.4e-30103158258
           CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          p+YVNaKQy++I++RR++Rak++ e+kl  ++rkpy+h SRh hA+rRpRg+gGrF
  Potri.006G201900.4 103 VPIYVNAKQYHGIIRRRKSRAKAALENKL-PRNRKPYMHRSRHLHAMRRPRGCGGRF 158
                         59***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-34100161IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.783101161IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.4E-22104126IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-26104158IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.4E-22135158IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MMIASRSHFL ARRCRKQRGN AASVILEKGD CKPSGGGQKS VQGAISLQTA LPEYYAHFDL  60
GFGQPVICAK YPVVDQCYGL FSTFGPQISG RIMLPMSTTT DDVPIYVNAK QYHGIIRRRK  120
SRAKAALENK LPRNRKPYMH RSRHLHAMRR PRGCGGRFLN TKELNDGKGI TEAKKAGDFQ  180
LSQPTGSQSS EVLESGGATL NSMEANCGGS NLSGSEVTSL YNRVDFDRFP FNHHGPTVHG  240
FSGMDGGHGI GIGMPSKWIA AADNCSNLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-18102163263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G201900.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101320.0AC210132.1 Populus trichocarpa clone POP011-D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381938.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_024459808.10.0nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLU5G8I20.0U5G8I2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s21640.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.34e-44nuclear factor Y, subunit A10