PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G202100.1
Common NamePOPTR_0006s21660g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 464aa    MW: 51251.1 Da    PI: 6.0763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G202100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.7e-12259305354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h + Er+RR+++N ++  Lr l+P++      K++ a+++  A++YIk+L
  Potri.006G202100.1 259 TKHFATERQRREHLNGKYTALRNLVPNP-----SKNDRASVVGDAINYIKEL 305
                         58*************************9.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.684256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-12259310No hitNo description
Gene3DG3DSA:4.10.280.109.5E-13259317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.29E-15259322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10260305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-11262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MYEETACFET NNSIVEGGND DGFCQVSPFM TGSSTTSSFE ESFKLSMEEL SNHYHQEESA  60
AAASMEEIQL QHHMAFNNNC HHLMEQYPTN HHQVLSYDHP SNWDPNTIQF QEMHQVLDQN  120
GNFNATANTP SSLLPDLLNL FNLPRCTSTS TLLPNSSISF TNPAHKTPSG FMGVDSTSVL  180
FDSNPLAPQF RELVHSLPPH GYGLPAPLFG GGQGGDHVDG LSGGGLSYQD GGHGDGVFEF  240
TAEMACIGKG IRKSGKVITK HFATERQRRE HLNGKYTALR NLVPNPSKND RASVVGDAIN  300
YIKELLRTVE ELKLLVEKKR NGRERIKRRK PEEDGGVDVL ENSNTKVEQD QSTYNNGSLR  360
SSWLQRKSKH TEVDVRLIED EVTIKLVQRK KVNCLLSVSK VLDELQLDLH HAAGGLIGDY  420
YSFLFNTKIN EGSCVYASGI ANKLLEVVDR QYASSTSVPA ASC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G202100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308327.30.0transcription factor bHLH91
TrEMBLA0A2K2A5760.0A0A2K2A576_POPTR; Uncharacterized protein
STRINGPOPTR_0006s21660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Representative plantOGRP26591431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.18e-80bHLH family protein