PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G229200.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 262aa    MW: 29718.3 Da    PI: 7.14
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G229200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.32.8e-10222242121
                GATA   1 CsnCgttkTplWRrgpdgnkt 21 
                         Cs C+tt+TplWR+gp+g+k 
  Potri.006G229200.2 222 CSDCNTTSTPLWRSGPRGPKV 242
                         *******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.658216239IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-5216240No hitNo description
SMARTSM004015.3E-4216260IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-7220242IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-7222242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MTDQMKKEKS WAIFPLTDVP CLLFFILFHI VHLYWTAGAA AKLSLPHPPS PSMTPAYLNP  60
ASSSFPFVDL REEQNLQLFL SPHQAATSLS GPTNFFNTSA HDHQRETKPG ESRQHDNQEV  120
DMYNISHGGS SSSFQPEVND HNYNSNFHNL SSSKMEDGAE ESGESSVKWM PSKMRLMQKM  180
TNSNCSETDH MPMKFMLKFH NQQYQNNEIN SSSNSNSNIR VCSDCNTTST PLWRSGPRGP  240
KVLFIYTRIV QCFNMYIKTV Y*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.174990.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G229200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1476140.0EF147614.1 Populus trichocarpa clone WS0123_N07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308561.21e-140GATA transcription factor 21
TrEMBLA9PGX11e-138A9PGX1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24560.11e-139(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-12cytokinin-responsive gata factor 1