PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G253800.1
Common NamePOPTR_0006s26990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 209aa    MW: 23347.6 Da    PI: 8.3763
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G253800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-182171155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  Potri.006G253800.1 21 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 71
                        59*****999.**********8.....334**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.27E-232181No hitNo description
PROSITE profilePS5103222.0362279IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-202281IPR016177DNA-binding domain
PfamPF008472.4E-112271IPR001471AP2/ERF domain
SMARTSM003806.8E-392285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-322281IPR001471AP2/ERF domain
PRINTSPR003673.3E-102334IPR001471AP2/ERF domain
PRINTSPR003673.3E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MILICSSVFL SFLSQIMVQS KKFRGVRQRQ WGSWVSEIRH PLLKRRVWLG TFETAEAAAR  60
AYDQAAILMN GQNAKTNFPA SHLDQDTKLG KDNNSPLPAK ALAELLYSKL RKCCGKDPSP  120
SLTCLRLDND NSHIGVWQKK AGSCSSSNWV MRVELGNSNR KSTQVMEELR PSLSSESSSR  180
VEIEPEINGT DEEDKIAMQM IDELLNCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-172179160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A8e-171682875Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.27091e-180leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269|PubMed:15319479}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G253800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1471401e-177EF147140.1 Populus trichocarpa clone WS01228_C18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309625.21e-154ethylene-responsive transcription factor SHINE 2
SwissprotQ3E9585e-70SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLB9HA501e-153B9HA50_POPTR; Uncharacterized protein
STRINGPOPTR_0006s26990.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.15e-66ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]