PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G277800.8
Common NamePOPTR_0006s29250g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 164aa    MW: 17790.6 Da    PI: 6.5233
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G277800.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.33e-12131162334
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                         ++kr rr+ +NRe+ArrsR+RK+a +  Le  
  Potri.006G277800.8 131 DIKRIRRMVSNRESARRSRKRKQAHLSDLEVQ 162
                         68***************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-8126163No hitNo description
PROSITE profilePS502179.082131163IPR004827Basic-leucine zipper domain
PfamPF001705.8E-10132163IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.95E-8132163No hitNo description
CDDcd147023.05E-13134163No hitNo description
PROSITE patternPS000360136151IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MEEQKAGGSD GMKKSESELA DFSAEIYGFF SDIFSGDLSS FPVNKTRDIV NGFSTCGGLT  60
ESCFLWSQNT NPKNSSVSVS TDAQSSLCVG SPMSANKPRV KDSQTRVAAS VSSPDQSDED  120
GLSEQSTNPH DIKRIRRMVS NRESARRSRK RKQAHLSDLE VQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145151RRSRKRK
2145152RRSRKRKQ
3147152SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.110881e-105stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G277800.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382195.11e-116basic leucine zipper 9
TrEMBLU5GEY11e-114U5GEY1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s29250.11e-115(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-25basic leucine zipper 9