PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G009400.1
Common NamePOPTR_0007s14480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 368aa    MW: 40526.1 Da    PI: 8.6583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G009400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-12180226455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ + f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Potri.007G009400.1 180 DHIMAERKRREKLSQQFIALSALVPGL-----KKMDKASVLDGAMKYMKQLQ 226
                         599************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.818176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16180238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-17181243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9181226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-9181222No hitNo description
SMARTSM003531.1E-14182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDDYKFIHQC NINSLAEFTA QNMATTLLGE NLQRSFSSES FSSKPSLMMT RNTTITSTSN  60
GSSSETSQTS IETPGKQQRT NSWNSSISTL HQSPKPPSPI PESFSFNNSA PPPTASSQQF  120
YGNLGRLIKS KDEAASPINM HFQTSISKAA CERSESYAPE AKQGIKRPYS MTRSAMHVQD  180
HIMAERKRRE KLSQQFIALS ALVPGLKKMD KASVLDGAMK YMKQLQEQLK QLQDQTKTKT  240
MESVVLLKKS KLSVDDECTS SDENFDGLPG SPLPEIEART TDKDVLIRIH CKNQQGVGIK  300
ILSEIENLHL SVVNSSVLVF GNSTLDVTVI AQMDNDFSLT MKDLVKKLRL ACLKLSCAII  360
PSSCVQA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189ERKRRE
2185190RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G009400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310318.30.0transcription factor bHLH18
RefseqXP_024461083.10.0transcription factor bHLH18
RefseqXP_024461084.10.0transcription factor bHLH18
RefseqXP_024461085.10.0transcription factor bHLH18
SwissprotQ9T0726e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A3N7GPD80.0A0A3N7GPD8_POPTR; Uncharacterized protein
STRINGPOPTR_0007s14480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-36bHLH family protein