PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G010500.1
Common NamePOPTR_0007s14360g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 230aa    MW: 25449.4 Da    PI: 9.8104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G010500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.6e-1361107354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+++E +RR+riN+ f +Lr++lP++      K++Ka++Le++++++k+L
  Potri.007G010500.1  61 KKHSMAESNRRSRINTQFTTLRTILPNL-----IKVNKASVLEETIRCVKEL 107
                         68*************************9.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.06858107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-1061107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-961112No hitNo description
Gene3DG3DSA:4.10.280.106.0E-1362116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-1362125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-964113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.24E-6146218No hitNo description
Gene3DG3DSA:3.30.70.2607.6E-7149218No hitNo description
CDDcd048735.06E-6149208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MALQQMHDVQ PLSSHSNSAG PCSNQDDFRQ ALLNSINETT YNNSMAKQLI SEEESKLVAA  60
KKHSMAESNR RSRINTQFTT LRTILPNLIK VNKASVLEET IRCVKELTNT VSELKEIYGG  120
GRLECVFPGG ADKLRIGSCE GKGQEVVKVV FSCDDKRKLL SDVARAVRSV KGKVVRAEMV  180
TMGGRTKCVL WVQGINGNEE LEMLRRVLNA LTEKPNMART CNRPKLTLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G010500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461149.11e-169transcription factor bHLH131
SwissprotP0CB251e-42BH131_ARATH; Transcription factor bHLH131
TrEMBLA0A2K1ZM961e-168A0A2K1ZM96_POPTR; Uncharacterized protein
STRINGPOPTR_0007s14360.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Representative plantOGRP1491034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.13e-42bHLH family protein