PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G016000.1
Common NamePOPTR_0007s13760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 787aa    MW: 84439 Da    PI: 4.8107
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G016000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.4e-06763786226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C+ f+++G+Ck G++C++ H+
  Potri.007G016000.1 763 GQRVCK-FYESGYCKKGASCSYWHP 786
                         6799**.8899***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF552774.71E-16101156IPR003169GYF domain
PROSITE profilePS5082914.639104158IPR003169GYF domain
CDDcd000725.82E-14104161No hitNo description
SMARTSM004442.7E-17105160IPR003169GYF domain
Gene3DG3DSA:3.30.1490.403.9E-17106157IPR003169GYF domain
PfamPF022132.8E-12107151IPR003169GYF domain
SuperFamilySSF902291.73E-6761785IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23761786IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4765785IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MGQNLATASE QSRDTCTTSY VDRDGTNMVH ERASESMQTQ GGEQTGLNSQ NAPKNWVAST  60
GSMTDDWKSQ SIVQCGSYSG VVSLNLPPPL SIGREQLVDD MEMDKLWHYQ DPTGKTQGPF  120
AMAQLRKWST SGLFPQDLRV WKINEKPDDS ILLTDALVGR FHKGPALPDN SYLLAQEAIV  180
ASDKDKRHEF DLHQSADASL VDKKNMDHWK SVQNNASVNC NDNDALLKSN ALGTHSSSWT  240
TGADAIIPNN GSAQLALQLL ELSKGCKSWS DQSQMCSSLS SLPSSGKIGE IPLPQAKEEH  300
EDEKRSYADS ESYSNQSSGQ NWRPPIKSSS GWDSKPAFVS GDKSVETSQK NEEIDFFDLP  360
SPTPKQHLKD LKGHTAENNH SISSKLPVLD SGCSWSTASS LVVGGATLAR VAGEWGGYSP  420
APVKPVEEWD SNHVSASSLK PTDGGSDHAS TQTPDSGPLA HSPSTHPVID ASDWQRIIPE  480
PTEFCSLVDE SVSDLLAEVE AMESLGGLPS PTSKLRSAEE LTRGYDDDCF SPVDGFSPAP  540
DPGKSDAFSS TADIQIPSHL TVASEALLSY EPLGLSQIDV PNPQKSFSEH SSTSPEVEGN  600
TKPNDVPVNE WEKGSEIQPL VSLAGNQGES GADIQSTTPS TASQLEAGSD VQQPTPSHGD  660
AGQGTINERE AQGNTNMVWG NGHGGTGQQH ARTNGANSAG NPGSWGSQPR YGGDRFSGPR  720
DHRNNFQGRD RDSGFGRDRS SWNKQPLHGG GNGASTYRPP PKGQRVCKFY ESGYCKKGAS  780
CSYWHP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.18750.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G016000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380791.20.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 44
TrEMBLA0A2K2AFG80.0A0A2K2AFG8_POPTR; Uncharacterized protein
STRINGPOPTR_0007s13760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Representative plantOGRP1552822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.13e-25nucleic acid binding;zinc ion binding;DNA binding