PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G023800.1
Common NamePOPTR_0007s13000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 79aa    MW: 8837.89 Da    PI: 10.0126
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G023800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.4e-10851344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT+   +l+ +a +++ ++   +W+ +a+ +g g++++++k ++
  Potri.007G023800.1  8 SWTPKQNKLFEKALALHDKDtpdRWHNVAKAVG-GKSAEEVKRHY 51
                        6********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.75459IPR017884SANT domain
SMARTSM007177.5E-9557IPR001005SANT/Myb domain
SuperFamilySSF466897.8E-13863IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-4856IPR009057Homeodomain-like
PfamPF002491.7E-8851IPR001005SANT/Myb domain
CDDcd001671.07E-7851No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MSSNSLTSWT PKQNKLFEKA LALHDKDTPD RWHNVAKAVG GKSAEEVKRH YEILIKDVRE  60
IESGRVPFPN YRSSGNGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-329751177RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G023800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310812.11e-52protein RADIALIS-like 3
SwissprotQ6NNN05e-36RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLB9HF153e-51B9HF15_POPTR; Uncharacterized protein
STRINGPOPTR_0007s13000.15e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.18e-37RAD-like 6