PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G035700.1
Common NamePOPTR_0007s11870g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 228aa    MW: 25698.6 Da    PI: 5.9205
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G035700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-1626111798
                         .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          sd +k++ + +p++f+++hg++   sk  +++ +s  +W+v++   k+++++ ++kGW+ F     ++ gDf+vF+++++s f  +v ++
  Potri.007G035700.1  26 LSDIMKNQKIAIPRRFLRKHGES--LSKSAVIKVPSAATWKVEF--LKHKDEVSFAKGWEMFIAYYSIDYGDFLVFEHEWNSLF--TVFII 110
                         48999***************966..8999***************..**********************************9888..66555 PP

                         - CS
                  B3  98 r 98 
                         +
  Potri.007G035700.1 111 D 111
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.84E-2014113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-2214113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.49220113IPR003340B3 DNA binding domain
CDDcd100173.74E-1620111No hitNo description
SMARTSM010192.0E-921113IPR003340B3 DNA binding domain
PfamPF023621.5E-1326111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MASCSKRDNN GSLFTPKKTH FIRIILSDIM KNQKIAIPRR FLRKHGESLS KSAVIKVPSA  60
ATWKVEFLKH KDEVSFAKGW EMFIAYYSID YGDFLVFEHE WNSLFTVFII DKSFTEVGYP  120
WNNTDAAESN QEDKLEDHED DDDDDASVEF IDISSGSQET GKGTKGKEKL GCSRNSEEYE  180
GDHGGRPAEN KCHPSGTPLS AARDSPGFYF TWTAKCTTKS AIKRKEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G035700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461439.11e-148B3 domain-containing protein At4g01580
TrEMBLA0A3N7FCF01e-146A0A3N7FCF0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11870.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-16B3 family protein