PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G039400.3
Common NamePOPTR_0007s11470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 245aa    MW: 27888.5 Da    PI: 6.7328
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G039400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like35.91.7e-11219242124
             G2-like   1 kprlrWtpeLHerFveaveqLGGs 24 
                         k+r++W+peLH+rFv+a++qLGG 
  Potri.007G039400.3 219 KQRRCWSPELHRRFVDALQQLGGC 242
                         79*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-8218243IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MELSLDLSLV CEPKTINECL KEVSMVKDGS QKLTKLYDYV ERLEDERRKI DAFKRELPLC  60
MLLLNEAIAR LKEEAMQCSE LNDLIPLKGN SNEDGNDKKN WMSSVQLWNT NNHLDCKKQD  120
SKSEPKQKSE EDDDRSTCEN PVQLGDHSNK GEAFVPFKAL SGFEGSKRKE EKEVVSQVTG  180
LSPMTPVPDL SSCNWTRKSN NCSNQTKILS KSQQQAYRKQ RRCWSPELHR RFVDALQQLG  240
GCQG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.35350.0bud
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00629PBMTransfer from PK14402.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G039400.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165990.0AC216599.1 Populus trichocarpa clone POP051-K05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310743.11e-180transcription factor HHO5
TrEMBLB9HE751e-178B9HE75_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11470.11e-179(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.13e-46G2-like family protein