PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G039500.2

Common Name

POPTR_0007s11460g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 281aa MW: 31225.3 Da PI: 6.6965

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G039500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.4	4.5e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa vhk+FGasnv kll++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+ql+ Potri.007G039500.2 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFASVHKVFGASNVAKLLNELNAAQREDAVNSLAYEAEERLRDPVYGCVGLISILQHRLKQLQ 97 7**************************************************************************************** PP DUF260 92 aelallkee 100 ++l +k+e Potri.007G039500.2 98 NDLYCAKKE 106 9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.455	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-42	7	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFASVH KVFGASNVAK LLNELNAAQR 60 EDAVNSLAYE AEERLRDPVY GCVGLISILQ HRLKQLQNDL YCAKKELANY IGPQAMLPMV 120 MQPQHMGNPS SSTVMQHSVM PMMGIPSVGQ MGMRAEAHQH QNHHVHPQQL YEAQQLAAVV 180 AAREQEILRA YEQQQQQHHQ QEIVRFNGGL EPANSVSDTG YNQINPSAAM PSSLALGTFD 240 NTFQIQPQGE PHPNQLQAQV LLQPQQIQQH PKSESEEALI *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-49	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-49	3	110	7	114	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.12333	0.0	bud\| catkin

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269\|PubMed:15821980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G039500.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024460961.1	0.0	LOB domain-containing protein 36
Swissprot	Q9FKZ3	3e-87	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2K1ZNX8	0.0	A0A2K1ZNX8_POPTR; Uncharacterized protein
STRING	POPTR_0007s11460.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	8e-86	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	Potri.007G039500.2
Entrez Gene	7483132

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]