PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G042500.1
Common NamePOPTR_0007s11170g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 478aa    MW: 53844.6 Da    PI: 8.8158
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G042500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.5e-20109199199
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f+k l++s+v +  ++ lp +f+++h  ++   + t+tl+de g+++++k+i  k++    l++GW++F+ a++L egD++vF+l+++ +f
  Potri.007G042500.1 109 FVKSLVRSHVASCFWMGLPGQFCRAHlPHV---DATVTLQDECGKEFKMKYIAYKTG----LSAGWRQFCVAHRLFEGDVLVFQLIESCTF 192
                         89************************5333...569***************666665....9************************98888 PP

                         ..EEEEE-S CS
                  B3  91 elvvkvfrk 99 
                           +v v+r+
  Potri.007G042500.1 193 --KVYVIRA 199
                         ..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-21102200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-25103200IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-26107198No hitNo description
PROSITE profilePS5086313.028109200IPR003340B3 DNA binding domain
SMARTSM010193.8E-23109200IPR003340B3 DNA binding domain
PfamPF023629.3E-18109199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MSGRVKKEVE ETDLIKQQPF HEENRKYVED GDGKQKSPME TTAKRLKIKR RYSDSKLKFV  60
ISGQAGKCIC CRQNRAPVER SNTVGETRSS ALIRAEEVQS NLEPAFPSFV KSLVRSHVAS  120
CFWMGLPGQF CRAHLPHVDA TVTLQDECGK EFKMKYIAYK TGLSAGWRQF CVAHRLFEGD  180
VLVFQLIESC TFKVYVIRAN DLTEVDGALG LLNLDAQIKQ NIADNAERGN TASKSSKRKR  240
PRSLPLAIVQ KKNKKSGQPR PSVLQAGQPA EQSENDSEEV GSEVLEGFKL SLPAVQFKDI  300
KSFEDFNILV DGLLLDSELS EDIRNKYYKL CCSQNAFLHD NLIKGVNLKL IAGIISETVN  360
IADAMRACTL NTSRDEFATW DKALKASELF GMNVGFLRSK LGLLLSLAFD SEGATKTRRY  420
IEARFKRVRT EDEIRNLEAK LVELKETYER YGADVERLKS KAEGYELKFQ EQVLAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G042500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310730.20.0B3 domain-containing protein Os01g0234100 isoform X1
TrEMBLB9HHH50.0B9HHH5_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-37B3 family protein