PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G043400.1
Common NamePOPTR_0007s11080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 208aa    MW: 22287.6 Da    PI: 7.9417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G043400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18117166255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp   g+  r +lg+f+ ae+Aa+a+++   +++g
  Potri.007G043400.1 117 KYRGVRQRP-WGKWAAEIRDP---GQGSRLWLGTFDNAEDAARAYDKKNIEFRG 166
                         8********.**********8...435*******************98777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.63117174IPR001471AP2/ERF domain
SMARTSM003807.2E-36117180IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-22117175IPR016177DNA-binding domain
PfamPF008471.1E-11117165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-31117175IPR001471AP2/ERF domain
CDDcd000182.81E-31118174No hitNo description
PRINTSPR003672.2E-11118129IPR001471AP2/ERF domain
PRINTSPR003672.2E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDASSLNNLV QRRVDEHNAI VSALKHVISG GIDHGSTTGP IEYQNQQQIL AADDGNVGGG  60
SSIIYVSDSE TCPVCKLSTS QCLGCVYFSS STTDQEGGGG GGNASKKKGK GKGRKNKYRG  120
VRQRPWGKWA AEIRDPGQGS RLWLGTFDNA EDAARAYDKK NIEFRGIRAI TNFPRSDYQV  180
QEMEQDKPNT TGEAKNAVGE TSQVGDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-23118174360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G043400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164690.0AC216469.1 Populus trichocarpa clone POP036-C22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310145.11e-153ethylene-responsive transcription factor ERF109
SwissprotO222592e-26ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLB9HHG61e-152B9HHG6_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11080.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.11e-24ERF domain protein 11
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]