 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.007G053500.1 |
| Common Name | POPTR_0007s10030g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 453aa MW: 50769.1 Da PI: 5.4113 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.007G053500.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 295.9 | 1e-90 | 49 | 449 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsev 87
++lL++c++a++s+d++l q++L+ l+++a pdgd++qRl+ f++AL ar a+ s+++k l++ e+++ n ++++++ +l f+++
Potri.007G053500.1 49 EQLLVHCVNAIESNDATLSQQILWVLNNIAPPDGDSNQRLTCAFLRALIARAAK--SGTCKLLAAMENAHCNlaiDTHKFSIIELasFVDL 137
79****************************************************..8888888887777777554233333333366**** PP
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvp 175
+P+++f++ +aN aIleaveg +Hi+D+++++++Q p+L +a+a+R e pp +++T+ g+ e + ++ee+g++L +fA++ ++
Potri.007G053500.1 138 TPWHRFGYTAANAAILEAVEGYLVIHIVDLSLTHCMQIPTLVDAIANRFEVPPLIKLTVAGATEDVpplLDLSYEELGSKLVNFARSRNII 228
**************************************************************88879988999****************** PP
GRAS 176 fefnvl.......vakrledleleeLrvkp.gEalaVnlvlqlhrll.................desvsleserdevLklvkslsPkvvvv 241
+ef+v+ ++ +e+l++++L + gEal++n++++lh+++ ++s s+ s r+ +Lk ++sl P++vv+
Potri.007G053500.1 229 MEFRVIpssyadgFSSFIEQLRVQHLVYAEsGEALVINCHMMLHYIPeetlsgipstnsntysyESSSSSMSFRTMFLKSLRSLDPTLVVL 319
******8885554445555556666655559********************************9777777778****************** PP
GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
v+++ad++s++++ r+ +a++y + +d++++ lpr s++r+++E+ + ++i+nv+a+eg +r+er e + +W +r+++a F+ +++ ++
Potri.007G053500.1 320 VDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSRQRQWYEAD-ICWKIENVIAHEGPQRVERLEPKCRWIQRMRNANFRGISFADD 409
***********************************************.******************************************* PP
GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
a +++k++l +++ g+ +++e++ +vl+Wk++++v++SaW
Potri.007G053500.1 410 AISEVKTMLDEHA-AGWGLKKEDDDIVLTWKGHNVVFASAW 449
*************.999************************ PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 453 aa
Download sequence Send
to blast |
MMQFTETPLP TLHQIITPIS NPTMNRNRPW PGFPTSKSLG SFGDANCMEQ LLVHCVNAIE 60
SNDATLSQQI LWVLNNIAPP DGDSNQRLTC AFLRALIARA AKSGTCKLLA AMENAHCNLA 120
IDTHKFSIIE LASFVDLTPW HRFGYTAANA AILEAVEGYL VIHIVDLSLT HCMQIPTLVD 180
AIANRFEVPP LIKLTVAGAT EDVPPLLDLS YEELGSKLVN FARSRNIIME FRVIPSSYAD 240
GFSSFIEQLR VQHLVYAESG EALVINCHMM LHYIPEETLS GIPSTNSNTY SYESSSSSMS 300
FRTMFLKSLR SLDPTLVVLV DEDADLTSNN LVCRLRSAFN YLWIPYDTVD TFLPRGSRQR 360
QWYEADICWK IENVIAHEGP QRVERLEPKC RWIQRMRNAN FRGISFADDA ISEVKTMLDE 420
HAAGWGLKKE DDDIVLTWKG HNVVFASAWL PA*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
