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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.007G053500.2 |
| Common Name | POPTR_0007s10030g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 430aa MW: 48159 Da PI: 5.416 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.007G053500.2 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 296.2 | 8.3e-91 | 26 | 426 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsev 87
++lL++c++a++s+d++l q++L+ l+++a pdgd++qRl+ f++AL ar a+ s+++k l++ e+++ n ++++++ +l f+++
Potri.007G053500.2 26 EQLLVHCVNAIESNDATLSQQILWVLNNIAPPDGDSNQRLTCAFLRALIARAAK--SGTCKLLAAMENAHCNlaiDTHKFSIIELasFVDL 114
79****************************************************..8888888887777777554233333333366**** PP
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvp 175
+P+++f++ +aN aIleaveg +Hi+D+++++++Q p+L +a+a+R e pp +++T+ g+ e + ++ee+g++L +fA++ ++
Potri.007G053500.2 115 TPWHRFGYTAANAAILEAVEGYLVIHIVDLSLTHCMQIPTLVDAIANRFEVPPLIKLTVAGATEDVpplLDLSYEELGSKLVNFARSRNII 205
**************************************************************88879988999****************** PP
GRAS 176 fefnvl.......vakrledleleeLrvkp.gEalaVnlvlqlhrll.................desvsleserdevLklvkslsPkvvvv 241
+ef+v+ ++ +e+l++++L + gEal++n++++lh+++ ++s s+ s r+ +Lk ++sl P++vv+
Potri.007G053500.2 206 MEFRVIpssyadgFSSFIEQLRVQHLVYAEsGEALVINCHMMLHYIPeetlsgipstnsntysyESSSSSMSFRTMFLKSLRSLDPTLVVL 296
******8885554445555556666655559********************************9777777778****************** PP
GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
v+++ad++s++++ r+ +a++y + +d++++ lpr s++r+++E+ + ++i+nv+a+eg +r+er e + +W +r+++a F+ +++ ++
Potri.007G053500.2 297 VDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSRQRQWYEAD-ICWKIENVIAHEGPQRVERLEPKCRWIQRMRNANFRGISFADD 386
***********************************************.******************************************* PP
GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
a +++k++l +++ g+ +++e++ +vl+Wk++++v++SaW
Potri.007G053500.2 387 AISEVKTMLDEHA-AGWGLKKEDDDIVLTWKGHNVVFASAW 426
*************.999************************ PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 430 aa
Download sequence Send
to blast |
MPRNRPWPGF PTSKSLGSFG DANCMEQLLV HCVNAIESND ATLSQQILWV LNNIAPPDGD 60
SNQRLTCAFL RALIARAAKS GTCKLLAAME NAHCNLAIDT HKFSIIELAS FVDLTPWHRF 120
GYTAANAAIL EAVEGYLVIH IVDLSLTHCM QIPTLVDAIA NRFEVPPLIK LTVAGATEDV 180
PPLLDLSYEE LGSKLVNFAR SRNIIMEFRV IPSSYADGFS SFIEQLRVQH LVYAESGEAL 240
VINCHMMLHY IPEETLSGIP STNSNTYSYE SSSSSMSFRT MFLKSLRSLD PTLVVLVDED 300
ADLTSNNLVC RLRSAFNYLW IPYDTVDTFL PRGSRQRQWY EADICWKIEN VIAHEGPQRV 360
ERLEPKCRWI QRMRNANFRG ISFADDAISE VKTMLDEHAA GWGLKKEDDD IVLTWKGHNV 420
VFASAWLPA*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
