PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G079800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 193aa    MW: 21887.2 Da    PI: 7.9329
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G079800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.4e-29102160159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +dDg++WrKYG+K+vk+s++pr+YY+C+s gC+vkk+ver++ed ++v + Y g Hnhe
  Potri.007G079800.1 102 MDDGFKWRKYGKKSVKNSPNPRNYYKCSSGGCNVKKRVERDREDSRYVLTSYDGVHNHE 160
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-3188162IPR003657WRKY domain
SuperFamilySSF1182903.66E-2694162IPR003657WRKY domain
PROSITE profilePS5081130.91797162IPR003657WRKY domain
SMARTSM007747.8E-32102161IPR003657WRKY domain
PfamPF031064.6E-22103160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEYYPQNPKP SYNYSYINEG LDPWAIEFQP SDYLMLDDGF GEDDSSSQNM VSPEQVASGS  60
STGYSGATSR NNSIKCKNGV KKNKTEVEHR VAFRTKSELE IMDDGFKWRK YGKKSVKNSP  120
NPRNYYKCSS GGCNVKKRVE RDREDSRYVL TSYDGVHNHE SPCMVYYNNQ MPLMASNAWT  180
LQPSSLHSSS FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-2490162274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G079800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774360.0GQ377436.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461002.11e-143probable WRKY transcription factor 51
TrEMBLA0A2K1ZR011e-141A0A2K1ZR01_POPTR; Uncharacterized protein
STRINGPOPTR_0007s06720.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-43WRKY DNA-binding protein 51