PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G085700.3
Common NamePOPTR_0007s06180g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 373aa    MW: 41847.4 Da    PI: 7.3032
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G085700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.93.7e-1286123238
                         XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHH CS
              bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLee.kvkeL 38 
                         +++k++rr+++NReAAr+sR+RKka++++Le  +vk +
  Potri.007G085700.3  86 PADKVQRRLAQNREAARKSRLRKKAYVQQLESsRVKLI 123
                         689***************************97244443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.5E-880133No hitNo description
SMARTSM003381.1E-785167IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.85287129IPR004827Basic-leucine zipper domain
PfamPF001704.2E-987124IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.92E-789127No hitNo description
CDDcd147081.04E-2189141No hitNo description
PROSITE patternPS00036092107IPR004827Basic-leucine zipper domain
PfamPF141442.9E-28175250IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNSTSTQFVT PGRMGIYDPM HQIGMWGENF KSNGNPNTST MFIAGNPNAS ASMIIAPDTK  60
LDNQSEDTSQ GTLGHSNKYD QEASKPADKV QRRLAQNREA ARKSRLRKKA YVQQLESSRV  120
KLIQLEQELD RARQQGLYIG GGVDASQLGF GGPTNSGIAT FEMEYAHWLE EQNRHICDMR  180
TALNAHISDV ELRIRVESDM SHYFELFRLK ATAAKADVFY VMSGLWKSSA ERFFLWIGGF  240
RPSELLKILV PCMEPLTEQQ LMDVLNLRQS CQQAEDALSQ GLEKLQQNVA ETVAAGKLGE  300
ASYSHHMETA MEKLEALARF VQQADHIRQE TLQQMSRILT TRQAARGLLA LGEYFQRLRA  360
LSSLWATPRE PA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G085700.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1951190.0EF195119.1 Populus tremula x Populus alba TGA transcription factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310002.30.0transcription factor TGA1
RefseqXP_024460949.10.0transcription factor TGA1
RefseqXP_024460950.10.0transcription factor TGA1
RefseqXP_024460951.10.0transcription factor TGA1
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A2K1ZRC00.0A0A2K1ZRC0_POPTR; BZIP family protein
STRINGPOPTR_0007s06180.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]