PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G093900.1
Common NamePOPTR_0007s05360g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 342aa    MW: 37793.7 Da    PI: 6.8397
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G093900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86.1e-191461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd++lv++++++G g+W++ ++  g++R++k+c++rw +yl
  Potri.007G093900.1 14 KGPWTSEEDQKLVKYIQKHGHGSWRALPKLSGLNRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding54.92e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
  Potri.007G093900.1  67 RGKFSQEEEQTILNLHSVLGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.286961IPR017930Myb domain
SuperFamilySSF466893.48E-3211108IPR009057Homeodomain-like
SMARTSM007172.0E-151363IPR001005SANT/Myb domain
PfamPF002495.9E-171461IPR001005SANT/Myb domain
CDDcd001672.98E-121661No hitNo description
PROSITE profilePS5129426.62762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2865117IPR009057Homeodomain-like
SMARTSM007179.8E-1766114IPR001005SANT/Myb domain
PfamPF002493.3E-1667112IPR001005SANT/Myb domain
CDDcd001671.53E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRSPCCDES GLKKGPWTSE EDQKLVKYIQ KHGHGSWRAL PKLSGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILN LHSVLGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DIFSSLPHLI ALANLKELID HHSLEEHALR LQTEAAQMAK LQYLQYLLQP  180
QPPAASNTAT SSNNLNNIGT LSDIEAFNLL NSLASLKDSP VSSLSQLDLP ASSLQGINDI  240
SIPFSHLPDL QIPCNYQTPP TKGMAQAPEL TVFSQGENSP ISPFQFPSSS TPFPPSAVPP  300
VTQISSMVNN LGDASSTSSY GEEVPSVWHD LLEDPMFHDI A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-32121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00503DAPTransfer from AT5G10280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G093900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461035.10.0transcription factor MYB53
SwissprotQ9SBF31e-107MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A2K1ZRS40.0A0A2K1ZRS4_POPTR; Uncharacterized protein
STRINGPOPTR_0007s05360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.16e-97myb domain protein 93
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]