PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G099100.1
Common NamePOPTR_0007s04810g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 151aa    MW: 16889.8 Da    PI: 10.5702
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G099100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.6e-1228113185
                         EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                         f k+lt+ dv k+  +++p + + +    +g     + l +ede+g++W++++++rk++    v+++ W  F+++++L  gD + F++ 
  Potri.007G099100.1  28 FSKELTKTDVRKR--MSIPTNKLPHLpqfQGA-CHAVVLEVEDERGQVWNMRCSIRKRKYLkPVISSSWVAFARSKNLGIGDKIFFYRG 113
                         7788988888876..8*****99555987444.3567999*************77444433499**********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-1919115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-1323113IPR015300DNA-binding pseudobarrel domain
CDDcd100176.06E-1628112No hitNo description
PfamPF023622.9E-928118IPR003340B3 DNA binding domain
SMARTSM010190.001828133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
METKNPCRLN LLLKIAPEMA SRSEILVFSK ELTKTDVRKR MSIPTNKLPH LPQFQGACHA  60
VVLEVEDERG QVWNMRCSIR KRKYLKPVIS SSWVAFARSK NLGIGDKIFF YRGLNDEDGP  120
SGVKYKIKVQ KATKVFGAIV GYGSPVHAAI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G099100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023087.11e-105PREDICTED: uncharacterized protein LOC105124679
TrEMBLA0A3N7GJH02e-93A0A3N7GJH0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s04810.11e-108(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-08B3 family protein