PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G105000.1
Common NamePOPTR_0007s04250g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 197aa    MW: 22235.9 Da    PI: 4.3242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G105000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM996.7e-31101261128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGf F+Ptdeelv ++L++k++  +++  ++i+++++y ++Pw+L+ k+ ++ ++wy+Fs+  +        n++t++g+Wk+  ++++
  Potri.007G105000.1  10 LPPGFVFSPTDEELVLHFLHRKASLLPCNP-DIIPDLGLYPHDPWQLEGKALSSGNQWYYFSQVME--------NQVTENGFWKSLDTEEP 91 
                         79*************************999.99***************77778899******9755........6789************* PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s+ g++vglkk Lv+      +g++t+W+m+ey+l
  Potri.007G105000.1  92 IFSSAGKKVGLKKYLVYCI--GAEGVETSWMMQEYHL 126
                         *****************95..56789*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-389153IPR003441NAC domain
PROSITE profilePS5100536.80910155IPR003441NAC domain
PfamPF023651.6E-1911126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGDHGCSGNL PPGFVFSPTD EELVLHFLHR KASLLPCNPD IIPDLGLYPH DPWQLEGKAL  60
SSGNQWYYFS QVMENQVTEN GFWKSLDTEE PIFSSAGKKV GLKKYLVYCI GAEGVETSWM  120
MQEYHLCNSK LSGTSYKRKQ KLDCHQWILC RVYEREGSCI QNVGNTTDDD DGTELSCLDE  180
MFLSMDDDLD DISFPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-31915916169NO APICAL MERISTEM PROTEIN
1ut4_B1e-31915916169NO APICAL MERISTEM PROTEIN
1ut7_A1e-31915916169NO APICAL MERISTEM PROTEIN
1ut7_B1e-31915916169NO APICAL MERISTEM PROTEIN
3swm_A1e-31915919172NAC domain-containing protein 19
3swm_B1e-31915919172NAC domain-containing protein 19
3swm_C1e-31915919172NAC domain-containing protein 19
3swm_D1e-31915919172NAC domain-containing protein 19
3swp_A1e-31915919172NAC domain-containing protein 19
3swp_B1e-31915919172NAC domain-containing protein 19
3swp_C1e-31915919172NAC domain-containing protein 19
3swp_D1e-31915919172NAC domain-containing protein 19
4dul_A1e-31915916169NAC domain-containing protein 19
4dul_B1e-31915916169NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G105000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165981e-143AC216598.1 Populus trichocarpa clone POP037-D13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310519.11e-146NAC domain-containing protein 104
SwissprotQ8GWK61e-63NC104_ARATH; NAC domain-containing protein 104
TrEMBLB9HES91e-145B9HES9_POPTR; Uncharacterized protein
STRINGPOPTR_0007s04250.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Representative plantOGRP45101024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.14e-61xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]