PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G108000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 215aa    MW: 24633.9 Da    PI: 7.3243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G108000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08122162954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Potri.007G108000.1 122 ARLRRERISEKIRILQRLVPGG-----RKMDTASMLDEAIRYVKFL 162
                         699*****************96.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.964113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-14119175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-12119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.83E-10119167No hitNo description
Gene3DG3DSA:4.10.280.101.1E-12120175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-6123162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MNINQTEFTN HTWNLHVSME DQILHHDRLP FVSICPSYPL QLQQTPIPAP NQVSLPTFLS  60
HDQIGNSTDE ADQDEPEEEL GAMKEMMYRV AAMQPVDIDP ATIHKPKRKN VRISDDPQSV  120
AARLRRERIS EKIRILQRLV PGGRKMDTAS MLDEAIRYVK FLKRQIRSLQ PNHQHQPCNT  180
NGDWQVPYND KPLNSITTTT SSSLEPRAAR LHSW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G108000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134930.0AC213493.1 Populus trichocarpa clone POP014-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460686.11e-160transcription factor HEC3-like
TrEMBLA0A2K1ZSJ81e-158A0A2K1ZSJ8_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06220.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-47bHLH family protein