PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G115100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 26843.9 Da    PI: 9.1399
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G115100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.61.2e-262575151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+i+n+  rqvtfskRr g++KKA+ELS+LCdae+a+ +fs tgkl+eys+
  Potri.007G115100.1 25 KKIDNTAARQVTFSKRRRGLFKKAYELSTLCDAEIALTVFSATGKLFEYSN 75
                        68***********************************************95 PP
2K-box43.41.4e-151141872699
               K-box  26 keienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         kei +  re+Rh+ GedL+ Lsl+eL+++e+ +e sl+++ + K+e  ++ i+ l+ k ++l een++L+++++
  Potri.007G115100.1 114 KEIAEKNRELRHMRGEDLQGLSLEELKKIEKLIEGSLRRVVEEKEEKSTKDINALKTKGEQLAEENQRLKQQVM 187
                         5555556899*************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.11777IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-371776IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-281899IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-261939IPR002100Transcription factor, MADS-box
CDDcd002654.22E-371984No hitNo description
PfamPF003191.4E-242673IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-263954IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-265475IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.267102192IPR002487Transcription factor, K-box
PfamPF014861.0E-12110186IPR002487Transcription factor, K-box
PROSITE profilePS500589.625161229IPR015898G-protein gamma-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007186Biological ProcessG-protein coupled receptor signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005834Cellular Componentheterotrimeric G-protein complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004871Molecular Functionsignal transducer activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKGLLWGELK CFYMVKMTRK KIQIKKIDNT AARQVTFSKR RRGLFKKAYE LSTLCDAEIA  60
LTVFSATGKL FEYSNTSMGQ VIERRNLHPK NIDTLHQPSL EQQLDGGVHA MLIKEIAEKN  120
RELRHMRGED LQGLSLEELK KIEKLIEGSL RRVVEEKEEK STKDINALKT KGEQLAEENQ  180
RLKQQVMNLS AAQGHLLEPG QSPDSLVTNI SSMSSADPRQ DNDSSCAFLT LGLPFPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-201782166MEF2C
5f28_B1e-201782166MEF2C
5f28_C1e-201782166MEF2C
5f28_D1e-201782166MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G115100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461638.11e-164MADS-box protein JOINTLESS
SwissprotQ9FUY62e-71JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2K1ZSW91e-163A0A2K1ZSW9_POPTR; Uncharacterized protein
STRINGcassava4.1_015454m8e-91(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.17e-60MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]