PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G115100.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23042.3 Da    PI: 8.8277
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G115100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.99.5e-27959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+i+n+  rqvtfskRr g++KKA+ELS+LCdae+a+ +fs tgkl+eys+
  Potri.007G115100.3  9 KKIDNTAARQVTFSKRRRGLFKKAYELSTLCDAEIALTVFSATGKLFEYSN 59
                        68***********************************************95 PP
2K-box454.5e-16731462699
               K-box  26 keienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         kei +  re+Rh+ GedL+ Lsl+eL+++e+ +e sl+++ + K+e  ++ i+ l+ k ++l een++L+++++
  Potri.007G115100.3  73 KEIAEKNRELRHMRGEDLQGLSLEELKKIEKLIEGSLRRVVEEKEEKSTKDINALKTKGEQLAEENQRLKQQVM 146
                         5555557999*************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.959161IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-26161IPR002100Transcription factor, MADS-box
CDDcd002651.66E-32360No hitNo description
PRINTSPR004047.6E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.08261151IPR002487Transcription factor, K-box
PfamPF014861.4E-1370145IPR002487Transcription factor, K-box
PROSITE profilePS500589.625120188IPR015898G-protein gamma-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007186Biological ProcessG-protein coupled receptor signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005834Cellular Componentheterotrimeric G-protein complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004871Molecular Functionsignal transducer activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTRKKIQIKK IDNTAARQVT FSKRRRGLFK KAYELSTLCD AEIALTVFSA TGKLFEYSNT  60
RELDGGVHAM LIKEIAEKNR ELRHMRGEDL QGLSLEELKK IEKLIEGSLR RVVEEKEEKS  120
TKDINALKTK GEQLAEENQR LKQQVMNLSA AQGHLLEPGQ SPDSLVTNIS SMSSADPRQD  180
NDSSCAFLTL GLACYTHFHT NNLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19160160MEF2C
5f28_B3e-19160160MEF2C
5f28_C3e-19160160MEF2C
5f28_D3e-19160160MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G115100.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1447399e-61EF144739.1 Populus trichocarpa clone WS01117_K02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461638.11e-130MADS-box protein JOINTLESS
SwissprotQ9FUY65e-55JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2K1ZSW91e-129A0A2K1ZSW9_POPTR; Uncharacterized protein
STRINGEOX986756e-70(Theobroma cacao)
STRINGPOPTR_0007s03280.12e-70(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.11e-43AGAMOUS-like 24
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]