PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G116600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 143aa    MW: 14883 Da    PI: 8.2135
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G116600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.37.6e-175389135
                GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Potri.007G116600.1 53 CTHCGISSksTPMMRRGPSGPRTLCNACGLKWANKGV 89
                        *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-1347101IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-125098No hitNo description
Gene3DG3DSA:3.30.50.102.3E-155193IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501148.6555395IPR000679Zinc finger, GATA-type
PROSITE patternPS0034405380IPR000679Zinc finger, GATA-type
CDDcd002021.33E-135395No hitNo description
PfamPF003201.8E-145389IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MKGARLHLAA VECRVLDKMR ACWKLCDEGG SASSGCSGMQ GSGQDESMLE TLCTHCGISS  60
KSTPMMRRGP SGPRTLCNAC GLKWANKGVL RNISKLPIMS IQQSSMKTVA QVNGEANNSD  120
TITAAADTVS PNGDNSTLAT ET*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G116600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166017e-33AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460709.13e-89GATA transcription factor 24
SwissprotQ9LRH63e-24GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A2K1ZT143e-99A0A2K1ZT14_POPTR; Uncharacterized protein
STRINGPOPTR_0007s03130.13e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.38e-26GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]