PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G116700.2
Common NamePOPTR_0007s03120g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 363aa    MW: 40764.2 Da    PI: 4.7246
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G116700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.32.7e-15218254135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg +   Tp +Rrgp g++tLCnaCGl+++ kg+
  Potri.007G116700.2 218 CQHCGISAkdTPAMRRGPAGPRTLCNACGLMWANKGT 254
                         *****88778************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009798.0E-581116IPR010399Tify domain
PROSITE profilePS5132012.10181116IPR010399Tify domain
PfamPF062006.1E-885115IPR010399Tify domain
PfamPF062032.4E-15149190IPR010402CCT domain
PROSITE profilePS5101713.037149191IPR010402CCT domain
SMARTSM004017.0E-11212265IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-11217270No hitNo description
Gene3DG3DSA:3.30.50.102.5E-14217259IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.31E-14217261No hitNo description
PfamPF003204.7E-13218254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MVKKMEMVNH QRQKRVRKGR DYHNRRVMQI EGGDFDYGYG FDDGMMEMIN GVGVEEEVGQ  60
FSANNNINGV VISNGNDGVF ESTRTSELTI AFEGEVYVFP AVTPSKVQAV LFLLGEPETS  120
TIVPSSEYLL QQNARNAGDA SQGLKHSRRV ASLVRFREKR KERCFEKKVR YTCRKEVAQK  180
MHRKRGQFAS LNNCYGTDTG NWEPSNGMRN PEFDLLRCQH CGISAKDTPA MRRGPAGPRT  240
LCNACGLMWA NKGTLRDLNK GGRQISFNQN EPESQEESKP VPLDSENSLR PNEQDLLETD  300
ETAPDPLPMR VENSSMNLDD EDFENTLDEL GDVSGSEFEI PEHFDDQVDI EDSSTGTEWP  360
GT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173184RKEVAQKMHRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G116700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166019e-47AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460618.10.0GATA transcription factor 19 isoform X3
TrEMBLA0A2K1ZT180.0A0A2K1ZT18_POPTR; Uncharacterized protein
STRINGPOPTR_0007s03120.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-45ZIM-like 1