PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G119400.1
Common NamePOPTR_0007s02840g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 113aa    MW: 12803.7 Da    PI: 8.7062
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G119400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.2e-111397989
                        HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SE CS
                  B3  9 dvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr..se 89
                           ks+ lv p   ++++   +g  e+ +    +d++gr+We+kl+ r++++    v+++ W ++v+++gL ++D+++++++ +  ++
  Potri.007G119400.1 13 TDIKSC-LVYPTANLRAFqmvQG--ENAIRFNARDPTGRVWEFKLCTRNHGRYkkPVIRGDWLDYVREKGLTVNDSIILTMVADaeNG 97
                        445566.7778888888864433..3556788899**********98777665779************************87554344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-10593IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-10793IPR015300DNA-binding pseudobarrel domain
CDDcd100172.73E-128104No hitNo description
PfamPF023621.5E-81596IPR003340B3 DNA binding domain
PROSITE profilePS508638.71343108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MEIELVNKKL TTTDIKSCLV YPTANLRAFQ MVQGENAIRF NARDPTGRVW EFKLCTRNHG  60
RYKKPVIRGD WLDYVREKGL TVNDSIILTM VADAENGGSY NIRVEPNTEL AI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G119400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003253.16e-64PREDICTED: uncharacterized protein LOC105110050
TrEMBLB9HE554e-78B9HE55_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02840.16e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14473313