PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G119800.1
Common NamePOPTR_0007s02800g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GeBP
Protein Properties Length: 505aa    MW: 55125 Da    PI: 4.6654
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G119800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.36.4e-35146240397
              DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                         +qrlws+eDeiv+L G+++++ ++gk+p++d  +f+ fvkks++++++++q+++KirrLKkK+ ++v+k +++ +  fsk+hd ++ el+k
  Potri.007G119800.1 146 PQRLWSDEDEIVMLNGMVEYQIEKGKNPFADNGDFHGFVKKSLHVDATNNQFLDKIRRLKKKYFTDVEKNEKEIDEIFSKPHDLECVELAK 236
                         69*******************************************************************99******************** PP

              DUF573  94 kiWg 97 
                         kiWg
  Potri.007G119800.1 237 KIWG 240
                         ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.8E-30147240IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MARRRPFEVA PPAVSSSEEE EETDGEEETP KGTVQAQQNG TGEKQNDNEN GSEDDDDDDD  60
DDDEEEKEKP NLPPSKPSKP DSESDSETDS EDTESTQPPS PSLSGFTIKP ISPKRKPGPK  120
LEQPKKENDV EDKKAKRGAG AGGGGPQRLW SDEDEIVMLN GMVEYQIEKG KNPFADNGDF  180
HGFVKKSLHV DATNNQFLDK IRRLKKKYFT DVEKNEKEID EIFSKPHDLE CVELAKKIWG  240
AGGIEMGKKG NFNKKSGKNV SGGGGGGGGE GEGEGGGGVR GGGITLALAK KGNEEANGEK  300
GKLSVKKGKR GSNEEVKVEG KEGDLKKKRQ GLGGEADEGE AGNVKKGKRG LSEEVNGEGK  360
GKGVKREKRA ADEEMSGEGE EVNVIVKKQR RLVNDEINGG GMELSVKKRN AVANEELDRE  420
EAGSEDFWDK YPYLRLALDG EILPEYLKER TMLVLGMVGE EKLVELEREW RSLMKAKLEF  480
MVMQKDLIAK QIKLSLDAMN SQDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G119800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309849.20.0GLABROUS1 enhancer-binding protein-like 1
TrEMBLB9HE520.0B9HE52_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2065435
Representative plantOGRP4222523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-24DNA-binding storekeeper protein-related transcriptional regulator