PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G128900.1

Common Name

POPTR_0007s01930g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 249aa MW: 28676 Da PI: 5.3094

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G128900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.2	4.4e-26	75	166	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r ++ k +++ ++r+ tr gC+a+l++ ++ gkw+++ + +eHnH+l+ Potri.007G128900.1 75 EFYELYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRGGKSPKgENRVFQSRPITREGCNAMLRIAAKDGGKWVIYGFIKEHNHDLN 165 6**************************************9877764667778*********************************97 PP FAR1 91 p 91 p Potri.007G128900.1 166 P 166 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-23	75	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MMASTSGEQF NSNRNYRCWL AETFDDQETA DDELAGNLDG NDNIIQQSIQ DFPVSLEPFE 60 PFIGMEFESA EDAREFYELY GRRMGFTIRN NRTRRSLKDN SIIGREFVCS KEGFRGGKSP 120 KGENRVFQSR PITREGCNAM LRIAAKDGGK WVIYGFIKEH NHDLNPSKIP PRRSHRIAFS 180 EDEKDLKIRE LSTELHREKK KSAAYQKQLQ MVLTYIEEHT QRLSLKAEVV ANKVKELESE 240 EPEDPDSD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.12328	7e-75	bud\| catkin

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G128900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006380293.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024460694.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	U5G3X1	0.0	U5G3X1_POPTR; Uncharacterized protein
STRING	POPTR_0007s01930.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15811	9	11
Representative plant	OGRP8956	5	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-47	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Potri.007G128900.1
Entrez Gene	18100847