PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G129000.1

Common Name

POPTR_0007s01920g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 144aa MW: 16343.7 Da PI: 8.4789

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G129000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.4	2.5e-28	48	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYAk+ GF +r+ +s+ks+++g+i++r++ C+keg++ +++k+ + + r+r+ +r gC a++ vk+ek gkw+vtk+ eHnH+l+ Potri.007G129000.1 48 FYDEYAKQEGFLTRIVSSRKSEHDGTIISRRLACNKEGFNLSSQKTGQVKIRKRERKREGCMAMILVKREKLGKWVVTKFTREHNHPLV 136 9*******************************************999************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.9E-26	48	136	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MEIETLVEDK IVTTESIVGG ETGVCEVDTS QEPYEGMVFE SENAARVFYD EYAKQEGFLT 60 RIVSSRKSEH DGTIISRRLA CNKEGFNLSS QKTGQVKIRK RERKREGCMA MILVKREKLG 120 KWVVTKFTRE HNHPLVISSK KVD*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G129000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003632074.2	7e-82	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	4e-22	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K1ZTL2	1e-100	A0A2K1ZTL2_POPTR; Uncharacterized protein
STRING	POPTR_0007s01920.1	4e-99	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104
Representative plant	OGRP3376	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-40	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Potri.007G129000.1
Entrez Gene	18100846

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]