PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G129100.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 169aa MW: 19509.6 Da PI: 8.9783

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G129100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.4	3e-10	51	89	2	40
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40 fY+eYA+++GF +r+ + ++s+r+g+i r++ C+keg+ Potri.007G129100.1 51 FYDEYARQIGFVMRVMSCRRSERDGRILARRLGCNKEGY 89 9************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-8	51	89	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MNRCLKVDID EGIEIVESSV GKEMVENVGK DTVVEPHKGM EFESEDAAKV FYDEYARQIG 60 FVMRVMSCRR SERDGRILAR RLGCNKEGYC VSIRGKFGNF EKSGKWVVTK FVKDHNHPLL 120 VAPREARQTM DAKDKKIQEL TAELRNKKRL CATYQEQITA FIKIVEKFL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G129100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214628	6e-83	AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011037100.1	1e-95	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3N7G3V3	2e-93	A0A3N7G3V3_POPTR; Uncharacterized protein
STRING	EOY04869	2e-89	(Theobroma cacao)
STRING	XP_002533360.1	3e-89	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104
Representative plant	OGRP3376	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-75	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Potri.007G129100.1