PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G129500.2
Common NamePOPTR_0007s01870g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 252aa    MW: 28756.2 Da    PI: 5.8995
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G129500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR191.88.7e-2987174291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p
  Potri.007G129500.2  87 FYNAYATRIGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKISSGKWVVTKFVKEHTHTLTP 174
                         ******************************************9988..9**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2587174IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDFIVDGDAN GDVPGNAVVD IARAGDENEI FENSAEEEFE QYEDRKMDKE TLDIDTITDG  60
APAMSMITAD EPYLGQEFDS EAAAHAFYNA YATRIGFVIR VSKLSRSRRD GSAIGRALVC  120
NKEGFRMPDK REKIVRQRAE TRVGCRAMIL VRKISSGKWV VTKFVKEHTH TLTPGKGRRD  180
CIYEQYPNEH DKIRELSQQL AIEKKRSATY KRHLELIFEH IEEHNESLSK KIQHTVDSVR  240
DMENKEQQSQ T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G129500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2146280.0AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460858.10.0protein FAR1-RELATED SEQUENCE 12 isoform X2
TrEMBLA0A2K1ZTL40.0A0A2K1ZTL4_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-89FAR1 family protein