PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G133000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 417aa    MW: 47953.8 Da    PI: 6.3873
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G133000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS190.31.3e-5863682374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          + Ll+ A+a+++gdl+la+++ ++++ l  +++ +++++l+ +++eAL +rl++    ly   p+  ++   s+++   +       P++
  Potri.007G133000.1   6 LNKLLASAKAIEDGDLNLAESVFKEIKCLnDANTSTATRKLVRFYAEALIRRLYK----LYPRNPTPLAP---STDSY--YIRCWRFLPFV 87 
                         5789************************95556669*******************....55433333333...33332..22356789*** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfd.isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv.pfefnv 180
                          f+     + Il+av g+++vH+i f+ ++  +    L++ L ++ ++  s+++T + ++ s+++e l+e+ + La  A++l++ +f+ + 
  Potri.007G133000.1  88 WFAEKSSHHSILDAVVGKKKVHVINFSnMEFNMLIRDLMRDLVKQVGSGLSFQVTNIRPKLSNNEEYLQEMDRVLAAEAKTLRLtDFKVDH 178
                         **************************83556889999**********************9999********************946***** PP

                GRAS 181 lvakrledleleeLrvkp...gE.alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                         + a++ + +  ++L++k+   +E a++V++ ++lh+l   +++le+    vL+ +k+l+P+++v+veqea+hns++ l+r+++++ yys++
  Potri.007G133000.1 179 VFANTAAGIVESTLNLKRtseDElAIVVKWEFELHKLILVPGALEK----VLSKLKELRPEIMVIVEQEANHNSPDILDRLAQSFPYYSSV 265
                         999999999999999998876555899***********99999999....***************************************** PP

                GRAS 268 fdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                         fds+e+   +++ e++++ E   ++r+i+nvva e  ++ erhet + Wr++l+++GF+pv+     + +   l +      y++e ++g+
  Potri.007G133000.1 266 FDSIEKDTTEHDiENKVSWEMD-FRRQITNVVAREDIQHAERHETQAWWRDQLRRSGFHPVRQWF--NHTRGFLFSDLT--QYTIEGKNGC 351
                         ****999877774555555655.************************************997544..445556777766..5********* PP

                GRAS 358 lvlgWkdrpLvsvSaWr 374
                          +l   + pLv +SaW+
  Potri.007G133000.1 352 PLLRRYTVPLVITSAWK 368
                         ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.5431352IPR005202Transcription factor GRAS
PfamPF035144.3E-566368IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MATLLLNKLL ASAKAIEDGD LNLAESVFKE IKCLNDANTS TATRKLVRFY AEALIRRLYK  60
LYPRNPTPLA PSTDSYYIRC WRFLPFVWFA EKSSHHSILD AVVGKKKVHV INFSNMEFNM  120
LIRDLMRDLV KQVGSGLSFQ VTNIRPKLSN NEEYLQEMDR VLAAEAKTLR LTDFKVDHVF  180
ANTAAGIVES TLNLKRTSED ELAIVVKWEF ELHKLILVPG ALEKVLSKLK ELRPEIMVIV  240
EQEANHNSPD ILDRLAQSFP YYSSVFDSIE KDTTEHDIEN KVSWEMDFRR QITNVVARED  300
IQHAERHETQ AWWRDQLRRS GFHPVRQWFN HTRGFLFSDL TQYTIEGKNG CPLLRRYTVP  360
LVITSAWKPN LLSLMEENVG SPESMSLGLQ FNDLSIIQNE GEEEGDPTIM REGIHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-131336927380Protein SCARECROW
5b3h_A1e-131336926379Protein SCARECROW
5b3h_D1e-131336926379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G133000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015945.10.0PREDICTED: DELLA protein GAIP-B-like
TrEMBLA0A2K1ZTT20.0A0A2K1ZTT2_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1790237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-65GRAS family protein