PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G135100.1
Common NamePOPTR_0007s01370g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 180aa    MW: 20311.7 Da    PI: 8.6952
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G135100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.5e-192174457
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                        + ++ ++ql+ Le+ F+ n++++ae++ eLA++lgLt rqV +W+qNrRa+ k+
  Potri.007G135100.1 21 KKRLARDQLRLLETSFNANQTLKAEHKIELASQLGLTSRQVEIWYQNRRARNKN 74
                        456899*********************************************995 PP
2HD-ZIP_I/II96.42.9e-3120111293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         +k+rl+++q++lLE+sF+++++L+ e+K ela++Lgl+ rqv++W+qnrRAR k+  +E+dy+ ++ ++ ++++en+rLek+v++L+ el+
  Potri.007G135100.1  20 RKKRLARDQLRLLETSFNANQTLKAEHKIELASQLGLTSRQVEIWYQNRRARNKNNAIEHDYKNVQLELGNVMTENTRLEKQVSTLKYELN 110
                         89*************************************************************************************9997 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Potri.007G135100.1 111 K 111
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-17775IPR009057Homeodomain-like
SuperFamilySSF466891.42E-161174IPR009057Homeodomain-like
PROSITE profilePS5007116.4711575IPR001356Homeobox domain
SMARTSM003894.9E-141879IPR001356Homeobox domain
CDDcd000863.40E-132075No hitNo description
PfamPF000465.1E-162073IPR001356Homeobox domain
PRINTSPR000312.2E-64655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000312.2E-65571IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MNSHLHHQSQ SHGNHALKPR KKRLARDQLR LLETSFNANQ TLKAEHKIEL ASQLGLTSRQ  60
VEIWYQNRRA RNKNNAIEHD YKNVQLELGN VMTENTRLEK QVSTLKYELN KVQQMILFGS  120
TTSASALASV SGYSDEQANS TSPGNMICNW RDAGNDEIFP VEELYTCLTG SGTQLWPLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G135100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309768.11e-132homeobox-leucine zipper protein ATHB-52
TrEMBLB9HGS41e-131B9HGS4_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01370.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1653559
Representative plantOGRP1636623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-22homeobox protein 52