PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G138800.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 173aa    MW: 18943.6 Da    PI: 8.4886
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G138800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP70.72.7e-2276123148
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                         +Cqve+C+a+l++ak+yhrrhkvC +h+ka+vvlv+g++qrfCqqCs 
  Potri.007G138800.2  76 CCQVEKCTANLTDAKQYHRRHKVCGHHAKAQVVLVAGIRQRFCQQCSS 123
                         6*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-2270123IPR004333Transcription factor, SBP-box
PROSITE profilePS5114116.20474143IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.23E-2175124IPR004333Transcription factor, SBP-box
PfamPF031104.1E-1777124IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDGKGKQIRM VMGREVMKKD SADDSSDDEG YEQNQMGFME DEFFESNKKK KVVVTAAAAA  60
GGGRRVSSGG GGGMRCCQVE KCTANLTDAK QYHRRHKVCG HHAKAQVVLV AGIRQRFCQQ  120
CSSLIEEDCD ADSMNYQNLM KPKEAVAGGW PDTMRGEGRM LLNLTWKAQA AK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-1868124258squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.14740.0bud
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G138800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309744.22e-54squamosa promoter-binding protein 1
TrEMBLB9HGP05e-53B9HGP0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01030.18e-54(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.11e-20squamosa promoter binding protein-like 5